SOLVED: Take a protein structure from Protein Data Bank (PDB). Calculate the protein structure as a reduced chain (virtual bond model) where each residue is represented by its alpha carbon (C) and side chain centroids (S). The successive alpha carbons are connected by virtual bonds. L1, L0, and L1 refer to the bond length between residue 1 and residue 1 1, the bond angle between the bond vectors i and i-1, and the torsional (rotational dihedral) angle defined by the bond vectors i 1, i, and i-1.
SOLVED: Take a protein structure from Protein Data Bank (PDB). Cal…
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