Frontiers

Integrative multi-omics analysis of gastric cancer evolution from precancerous lesions to metastasis identifies a deep learning-based prognostic model

Gastric cancer progression involves complex interactions among tumor cells, immune components, and stromal elements within the tumor microenvironment. However, a comprehensive understanding of ...
Cancer Research

Artificial Intelligence Algorithm Predicts Response to Immune Checkpoint Inhibitors

7School of Computing Science, University of Glasgow, Glasgow, United Kingdom. 8School of Cancer Sciences, University of Glasgow, Glasgow, United Kingdom. Search for other works by this author on: ...
Times Higher Education

Amsterdam University of Applied Sciences

Basic information and contact details for Amsterdam University of Applied Sciences With over 46,000 students in attendance, the Amsterdam University of Applied Science (AUAS) is among the largest ...
GitHub

Implements the Leiden algorithm via an R interface

Since October 2020, the R package igraph contains the function cluster_leiden() implemented by Vincent Traag (@vtraag). The usage of this function is detailed in the igraph documentation here. We ...
GitHub

Mugen-UMAP: UMAP visualization and clustering of mutated genes in single-cell DNA sequencing data.

This Python program provides a comprehensive pipeline for processing ANNOVAR files, converting them into AnnData format, and generating UMAP visualizations along with various summary reports based on ...
PNAS

Diffusive topology preserving manifold distances for single-cell data analysis

Distortions from traditional dimensionality reduction methods obscure relationships in high-dimensional single-cell data, thus impeding biological insights. We introduce DTNE (diffusive topology ...