Abstract: Enabling data analysis in large data depositories for high throughput experimental data such as gene microarrays and ChIP-seq is challenging. In this paper, we discuss three methods for ...

The tumor microenvironment (TME) has been reported to crucially regulate tumor growth, progression, migration, and angiogenesis in different cancer types including brain tumors. TME is a complex ...

Persistent high-risk human papillomavirus (hrHPV) infection is confirmed as the major cause of cervical cancer. According to the HPV infection status, cervical cancer could be generalized as following ...

One of the biggest hurdles when starting data analysis is being faced with a blank code document. Writing code that’s clean and processes your data exactly how you want it to is time-consuming and ...

Many biomedical researchers are striving to make sense of the flood of data that has followed recent advances in genomic sequencing technologies. In particular, researchers are often limited by the ...

Java 8 or 9. Note that GenePattern will not run if Java 11 is installed. Make sure you do not have Java 11 installed. Switching and disabling will not work. Download the GPserver.app.zip file. Unzip, ...

The availability of open-source tools has broadened the reach of genome sequence analysis, but the need for programming skills has slowed uptake among biologists. GenePattern is aimed at these ...

Efficacy and Safety of Trabectedin in Patients With Advanced or Metastatic Liposarcoma or Leiomyosarcoma After Failure of Prior Anthracyclines and Ifosfamide: Results of a Randomized Phase II Study of ...