First, I cloned the Mac partition with CarbonCopyCloner to clone the Lion installation and then I used WinClone for the Bootcamp partition under Lion. Everything worked perfectly.

How to Clone Your Hard Disk to an SSD Using Clonezilla Clonezilla is free and is OS-independent drive cloning software.

Is there some nuance to cloning encrypted disks I am missing? My only guess at the moment is maybe if I boot from a live disk and copy the disks that way, that way the source SSD remains locked.

Installing Windows 10 on a Mac that sports a Fusion Drive, Apple's branding for hybrid SSD/HDD systems, creates the Windows partition on the mechanical drive.