The Bayesian method is noted to produce spuriously high posterior probabilities for phylogenetic trees in analysis of large datasets, but the precise reasons for this overconfidence are unknown. In ...
A surprising number of recent Bayesian phylogenetic analyses contain branch-length estimates that are several orders of magnitude longer than corresponding maximum-likelihood estimates. The levels of ...
The paper: M.C. Brandley et al., "Partitioned Bayesian analyses, partition choice, and the phylogenetic relationships of scincid lizards," Systematic Biol, 54:373-90, 2005. (Cited in 73 papers) The ...
Download a 1-page "how-to" doc on hand-building UPGMA and neighbor-joining trees. Download an Excel spreadsheet showing how to build UPGMA, Fitch-Margoliash or Neighbor-joining trees by hand For the ...
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